ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

TGIF2

Function : TGFB induced factor homeobox 2
Description : The protein encoded by this gene is a DNA-binding homeobox protein and a transcriptional repressor, which appears to repress transcription by recruiting histone deacetylases to TGF beta-responsive genes. This gene is amplified and over-expressed in some ovarian cancers. Alternative splicing results in multiple transcript variants. A related pseudogene has been identified on chromosome 1. Read-through transcription also exists between this gene and the neighboring downstream C20orf24 (chromosome 20 open reading frame 24) gene. [provided by RefSeq, Dec 2010]

Classification  

Super Class Helix-turn-helix domains
Class Homeo domain factors
Family TALE-type homeo domain factors
Sub Family TGIF

External references

Ensembl ENSG00000118707
RefSeq NP_001186443
Uniprot Q9GZN2
Aliases -
UCSC Gene coordinates chr20:36573472-36593951

External Links

JASPAR MA0797.1
Wikipedia TGIF2
WikiGenes TGIF2
Transcription Factor Encylopedia TGIF2    
GeneCards TGIF2
FactorBook TGIF2


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for TGIF2

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for TGIF2