ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

TRIM22

Function : tripartite motif containing 22
Description : The protein encoded by this gene is a member of the tripartite motif (TRIM) family. The TRIM motif includes three zinc-binding domains, a RING, a B-box type 1 and a B-box type 2, and a coiled-coil region. This protein localizes to the cytoplasm and its expression is induced by interferon. The protein down-regulates transcription from the HIV-1 LTR promoter region, suggesting that function of this protein may be to mediate interferon's antiviral effects. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2010]

Classification  

Super Class Unknown
Class Unknown
Family Unknown
Sub Family Unknown

External references

Ensembl ENSG00000132274
RefSeq NP_001186502
Uniprot Q8IYM9
Aliases GPSTAF50, RNF94, STAF50
UCSC Gene coordinates chr11:5689586-5710862

External Links

JASPAR TRIM22
Wikipedia TRIM22
WikiGenes TRIM22
Transcription Factor Encylopedia TRIM22    
GeneCards TRIM22
FactorBook TRIM22


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for TRIM22

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for TRIM22