ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

USF1

Function : upstream transcription factor 1
Description : This gene encodes a member of the basic helix-loop-helix leucine zipper family, and can function as a cellular transcription factor. The encoded protein can activate transcription through pyrimidine-rich initiator (Inr) elements and E-box motifs. This gene has been linked to familial combined hyperlipidemia (FCHL). Alternative splicing of this gene results in multiple transcript variants. A related pseudogene has been defined on chromosome 21. [provided by RefSeq, Feb 2013]

Classification  

Super Class Basic domains
Class Basic helix-loop-helix factors (bHLH)
Family bHLH-ZIP factors
Sub Family USF factors

External references

Ensembl ENSG00000158773
RefSeq NP_001263302
Uniprot P22415
Aliases FCHL, FCHL1, HYPLIP1, MLTF, MLTFI, UEF, bHLHb11
UCSC Gene coordinates chr1:161039250-161045978

External Links

JASPAR MA0093.2
Wikipedia USF1
WikiGenes USF1
Transcription Factor Encylopedia USF1    
GeneCards USF1
FactorBook USF1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for USF1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for USF1