ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

ZBED1

Function : zinc finger BED-type containing 1
Description : This gene is located in the pseudoautosomal region 1 (PAR1) of X and Y chromosomes. It was earlier identified as a gene with similarity to Ac transposable elements, however, was found not to have transposase activity. Later studies show that this gene product is localized in the nucleus and functions as a transcription factor. It binds to DNA elements found in the promoter regions of several genes related to cell proliferation, such as histone H1, hence may have a role in regulating genes related to cell proliferation. Alternatively spliced transcript variants with different 5' untranslated region have been found for this gene. [provided by RefSeq, Jan 2010]

Classification  

Super Class Zinc-coordinating DNA-binding domains
Class C2H2 zinc finger factors
Family BED zinc finger factors
Sub Family None

External references

Ensembl ENSG00000214717
RefSeq NP_004720
Uniprot O96006
Aliases ALTE, DREF, TRAMP, hDREF
UCSC Gene coordinates chrX|Y:2486413-2500966

External Links

JASPAR MA0749.1
Wikipedia ZBED1
WikiGenes ZBED1
Transcription Factor Encylopedia ZBED1    
GeneCards ZBED1
FactorBook ZBED1


Genomic visualization & Analyses for MACS

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

MACS - Datasets retained for ZBED1

Genomic visualization & Analyses for JAMM

Datasets
quality
DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)
BED file
Peak sequences FASTA file

JAMM - Datasets retained for ZBED1