ReMap 2018 v1.2

An integrative ChIP-seq analysis of regulatory regions

ZKSCAN1

Function : zinc finger with KRAB and SCAN domains 1
Description : This gene encodes a member of the Kruppel C2H2-type zinc-finger family of proteins. This encoded protein may function as a transcription factor that regulates the expression of GABA type-A receptors in the brain. Transcripts from this gene have been shown to form stable and abundant circular RNAs. Elevated expression of this gene has been observed in gastric cancer and the encoded protein may stimulate migration and invasion of human gastric cancer cells. [provided by RefSeq, Oct 2016]

Classification  

Super Class Zinc-coordinating DNA-binding domains
Class C2H2 zinc finger factors
Family More than 3 adjacent zinc finger factors
Sub Family ZNF24-like factors

External references

Ensembl ENSG00000106261
RefSeq NP_001333510
Uniprot P17029
Aliases KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33
UCSC Gene coordinates chr7:100015571-100045522

External Links

JASPAR ZKSCAN1
Wikipedia ZKSCAN1
WikiGenes ZKSCAN1
Transcription Factor Encylopedia ZKSCAN1    
GeneCards ZKSCAN1
FactorBook ZKSCAN1


Genomic visualization & Analyses for MACS

Datasets
quality 		DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for MACS

All peaks BED file
Merged peaks
(non-redundant peaks)		 BED file
Peak sequences FASTA file

MACS - Datasets retained for ZKSCAN1

Genomic visualization & Analyses for JAMM

Datasets
quality 		DNA constraint
Motifs UCSC genome
browser

Downloading peaks and sequences for JAMM

All peaks BED file
Merged peaks
(non-redundant peaks)		 BED file
Peak sequences FASTA file

JAMM - Datasets retained for ZKSCAN1