ReMap - An Atlas of Regulatory Regions from an integrative analysis of ChIP-seq experiments

Welcome to ReMap an integrative analysis of transcriptional regulators ChIP-seq experiments from both Public and Encode datasets. The ReMap atlas consists of 80 million peaks from 485 transcription factors (TFs), transcription coactivators (TCAs) and chromatin-remodeling factors (CRFs). The atlas is available to browse or download either for a given TF or cell line, or for the entire dataset.
You can navigate ReMap on the UCSC Genome Browser [EU], [US], the Ensembl Browser [EU],[US],[Asia] or as Track Hubs.

Transcription Factor	Class	Source	Aliases	Cell Types
ADNP	C2H2 zinc finger factors, Homeo domain factors	Encode	ADNP1, HVDAS, MRD28	K562
AFF4	Unknown	Public	AF5Q31, CHOPS, MCEF	HELA HEK293T HCT166 HCT116 CD4
AHR	Basic helix-loop-helix factors (bHLH)	Public	bHLHe76	MCF7
AR	Nuclear receptors with C4 zinc fingers	Public	AIS, AR8, DHTR, HUMARA, HYSP1, KD, NR3C4, SBMA, SMAX1, TFM	VCAP PROSTATE PLHSAR PC3 MDAMB453 MDAMB45 MCF7 LNCAP LHSAR DUCAP DU145 C42B 22RV1
ARID1A	ARID domain factors	Public	B120, BAF250, BAF250a, BM029, C1orf4, CSS2, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1	HEPG2
ARID1B	ARID domain factors	Public	6A3-5, BAF250B, BRIGHT, CSS1, DAN15, ELD/OSA1, MRD12, OSA2, P250R	HEPG2
ARID2	ARID domain factors	Public	BAF200, p200	HEPG2
ARID3A	ARID domain factors	Encode	BRIGHT, DRIL1, DRIL3, E2FBP1	K562 HEPG2 GM12878
ARNT	Basic helix-loop-helix factors (bHLH)	Public + Encode	HIF-1-beta, HIF-1beta, HIF1-beta, HIF1B, HIF1BETA, TANGO, bHLHe2	T47D MCF7 K562
ARNTL	Basic helix-loop-helix factors (bHLH)	Public	BMAL1, BMAL1c, JAP3, MOP3, PASD3, TIC, bHLHe5	U2OS
ARRB1	Unknown	Public	ARB1, ARR1	PROSTATE C42
ASCL1	Basic helix-loop-helix factors (bHLH)	Public	ASH1, HASH1, MASH1, bHLHa46	SCLC NCIH889 NCIH82 NCIH2107 H128
ASH2L	Unknown	Public	ASH2, ASH2L1, ASH2L2, Bre2	VCAP
ASXL1	Unknown	Public	BOPS, MDS	HEK293T
ATF1	Basic leucine zipper factors (bZIP)	Encode	EWS-ATF1, FUS/ATF-1, TREB36	K562 HEPG2
ATF2	Basic leucine zipper factors (bZIP)	Encode	CRE-BP1, CREB-2, CREB2, HB16, TREB7	GM12878 ESC
ATF3	Basic leucine zipper factors (bZIP)	Public + Encode	-	LIVER K562 HEPG2 HCT166 HCT116 GM12878 ESC A549
ATF4	Basic leucine zipper factors (bZIP)	Public + Encode	CREB-2, CREB2, TAXREB67, TXREB	HMSC HEPG2
ATF7	Basic leucine zipper factors (bZIP)	Encode	ATFA	K562
ATRX	Other C4 zinc finger-type factors	Public	JMS, MRX52, RAD54, RAD54L, XH2, XNP, ZNF-HX	LAN6 K562 ERYTHROID
BACH1	Basic leucine zipper factors (bZIP)	Encode	BACH-1, BTBD24	K562 HEPG2 GM12878 ESC A549
BACH2	Basic leucine zipper factors (bZIP)	Public	BTBD25	OCILY7 DOHH2
BAHD1	Unknown	Public	-	HEK293
BATF	Basic leucine zipper factors (bZIP)	Public + Encode	B-ATF, BATF1, SFA-2, SFA2	OCILY3 OCILY10 GM12878
BCL11A	C2H2 zinc finger factors	Public + Encode	BCL11A-L, BCL11A-S, BCL11A-XL, BCL11a-M, CTIP1, DILOS, EVI9, HBFQTL5, ZNF856	MDA157 MCF10A GM12878 ESC
BCL3	Rel homology region (RHR) factors	Encode	BCL4, D19S37	GM12878 A549
BCL6	C2H2 zinc finger factors	Public	BCL5, BCL6A, LAZ3, ZBTB27, ZNF51	OCILY7 OCILY1 CD4 BCELL
BCLAF1	Unknown	Encode	BTF, bK211L9.1	K562 GM12878
BCOR	Unknown	Public	ANOP2, MAA2, MCOPS2	BCELL
BDP1	Unknown	Public + Encode	HSA238520, TAF3B1, TFC5, TFIIIB, TFIIIB150, TFIIIB90, TFNR	K562 IMR90 HELA
BHLHE22	Basic helix-loop-helix factors (bHLH)	Public	BHLHB5, Beta3, Beta3a, CAGL85, TNRC20	CAL1
BHLHE40	Basic helix-loop-helix factors (bHLH)	Encode	BHLHB2, Clast5, DEC1, HLHB2, SHARP-2, SHARP2, STRA13, Stra14	K562 HEPG2 GM12878 A549
BMI1	Unknown	Public + Encode	FLVI2/BMI1, PCGF4, RNF51, flvi-2/bmi-1	K562 HEK293T
BMPR1A	Unknown	Public	10q23del, ACVRLK3, ALK3, CD292, SKR5	HUVEC
BRCA1	Unknown	Public + Encode	BRCAI, BRCC1, BROVCA1, FANCS, IRIS, PNCA4, PPP1R53, PSCP, RNF53	MCF10A HEPG2 HELA GM12878 ESC A549
BRD1	Unknown	Public	BRL, BRPF1, BRPF2	RKO
BRD2	Unknown	Public	BRD2-IT1, D6S113E, FSH, FSRG1, NAT, O27.1.1, RING3, RNF3	MM1S HUVEC HEK293T
BRD3	Unknown	Public	ORFX, RING3L	MM1S HUVEC HEK293T
BRD4	Unknown	Public	CAP, HUNK1, HUNKI, MCAP	U87MG T47D SW480 SUM185 SUM159 SUM149 SUM1315 SGBS P4936 OCILY1 NCIH2171 MV411 MPNST MOLM14 MM1S MDA436 MDA231 MDA157 MCF7 MCF10A LP1 KOPTK1 JURKAT IMR90 HUVEC HT29 HFOB HELA HEK293T HCT166 HCT15 HCT116 HCC1395 ESC DND41 COLO741 COLO320 COLO205 CD4 BT474 BE2C
BRF1	Unknown	Encode	BRF, BRF-1, CFDS, GTF3B, HEL-S-76p, TAF3B2, TAF3C, TAFIII90, TF3B90, TFIIIB90, hBRF	K562 HELA
BRF2	Unknown	Public + Encode	BRFU, TFIIIB50	K562 IMR90 HELA
C17ORF49	Unknown	Public	BAP18, HEPIS	HELA
CARM1	Unknown	Public	PRMT4	NCIH3396
CBFA2T2	Unknown	Public	EHT, MTGR1, ZMYND3, p85	NCCIT
CBFB	Unknown	Public + Encode	PEBP2B	SKNO1 ME1 GM12878
CBX1	Unknown	Encode	CBX, HP1-BETA, HP1Hs-beta, HP1Hsbeta, M31, MOD1, p25beta	K562 HEPG2
CBX2	Unknown	Public + Encode	CDCA6, M33, SRXY5	K562 HEK293T
CBX3	Unknown	Encode	HECH, HP1-GAMMA, HP1Hs-gamma	K562 HCT166
CBX4	Unknown	Public	NBP16, PC2	HEK293T
CCNT2	Unknown	Encode	CYCT2	K562
CDK2	Unknown	Public	CDKN2, p33(CDK2)	T47D
CDK6	Unknown	Public	MCPH12, PLSTIRE	KB
CDK7	Unknown	Public	CAK, CAK1, CDKN7, HCAK, MO15, STK1, p39MO15	SKMEL147 MM1S JURKAT
CDK8	Unknown	Public	K35	SW480 SET2 MV411 MOLM14 MM1S K562 HCT166
CDK9	Unknown	Public	C-2k, CDC2L4, CTK1, PITALRE, TAK	P4936 MM1S HEK293T HCT166 CD4 BT474 A375
CDX2	Homeo domain factors	Public	CDX-3, CDX2/AS, CDX3	LS180 COLO320 CACO2
CEBPA	Basic leucine zipper factors (bZIP)	Public	C/EBP-alpha, CEBP	U937 SGBS LIVER KASUMI1 HEPG2
CEBPB	Basic leucine zipper factors (bZIP)	Public + Encode	C/EBP-beta, IL6DBP, NF-IL6, TCF5	MONOCYTE MCF7 LS180 K562 ISHIKAWA IMR90 HMSC HFOB HEPG2 HELA HCT166 GM12878 ESC A549
CEBPD	Basic leucine zipper factors (bZIP)	Encode	C/EBP-delta, CELF, CRP3, NF-IL6-beta	K562 HEPG2
CEBPG	Basic leucine zipper factors (bZIP)	Encode	GPE1BP, IG/EBP-1	MCF7 K562
CEBPZ	Unknown	Encode	CBF, CBF2, HSP-CBF, NOC1	K562 HEPG2 GM12878
CHD1	Unknown	Public + Encode	PILBOS	LNCAP K562 IMR90 HELA GM12878 ESC A549
CHD2	Unknown	Encode	EEOC	K562 HEPG2 HELA GM12878 ESC A549
CHD4	Unknown	Encode	CHD-4, Mi-2b, Mi2-BETA, SIHIWES	K562
CHD7	Unknown	Encode	CRG, HH5, IS3, KAL5	K562 ESC
CHD8	Unknown	Public	AUTS18, HELSNF1	T47D HNSC
CIITA	Unknown	Public	C2TA, CIITAIV, MHC2TA, NLRA	RAJI
CLOCK	Basic helix-loop-helix factors (bHLH)	Public	KAT13D, bHLHe8	U2OS
CREB1	Basic leucine zipper factors (bZIP)	Public + Encode	CREB, CREB-1	LNCAP KG1 K562 ISHIKAWA HEPG2 GM12878 ESC A549
CREB3	Basic leucine zipper factors (bZIP)	Encode	LUMAN, LZIP, sLZIP	K562
CREB3L1	Basic leucine zipper factors (bZIP)	Encode	OASIS	K562
CREBBP	Unknown	Public + Encode	CBP, KAT3A, RSTS, RSTS1	NCIH3396 MCF7 LS180 K562
CREM	Basic leucine zipper factors (bZIP)	Encode	CREM-2, ICER, hCREM-2	K562 GM12878
CRY1	Unknown	Public	DSPD, PHLL1	U2OS
CSNK2A1	Unknown	Public	CK2A1, CKII, CSNK2A3, Cka1, Cka2, OCNDS	LNCAP
CTBP1	Unknown	Public + Encode	BARS	MCF7 LNCAP
CTBP2	Unknown	Public + Encode	-	LNCAP ESC
CTCF	C2H2 zinc finger factors	Public + Encode	MRD21	ZR751 WI38VA13 WI38 WERIRB1 VCAP U937 TLYMPHOCYTE THP1 T47D SUM159 SUDHL6 SPLEEN SKNSH PANCREAS OVCAR8 OSTEOBLAST OCILY7 OCILY3 NEURAL NB4 MYOTUBE MYOBLAST MUSCLE MONOCYTE MM1S MEDULLOBLASTOMA MCF7 MCF10A LYMPHOCYTE LUNG LOUCY LNCAP KIDNEY KERATINOCYTE KARPAS422 K562 JURKAT ISLET ISHIKAWA IMR90 HSPC HL60 HFF HEPG2 HEPATOCYTE HELA HEK293 HCT166 H54 GP5D GM20000 GM19240 GM19239 GM19238 GM13977 GM13976 GM12892 GM12891 GM12878 GM12875 GM12874 GM12873 GM12872 GM12870 GM12869 GM12868 GM12867 GM12866 GM12865 GM12864 GM12801 GM10266 GM10248 GM06990 FIBROBLAST ESC ERYTHROID EPITHELIAL ENDOTHELIAL DOHH2 DND41 DELTA47 CHRF28811 CD14 CACO2 BL41 BJAB BJ BE2C BCELL BCBL1 ASTROCYTE ASC A549 813 786O
CTCFL	C2H2 zinc finger factors	Public + Encode	BORIS, CT27, CTCF-T, HMGB1L1, dJ579F20.2	OVCAR8 NHDF K562 DELTA47
CTNNB1	Unknown	Public	CTNNB, EVR7, MRD19, armadillo	LS180
CUX1	Unknown	Encode	CASP, CDP, CDP/Cut, CDP1, COY1, CUTL1, CUX, Clox, Cux/CDP, GOLIM6, Nbla10317, p100, p110, p200, p75	MCF7 K562 HEPG2 GM12878
CXXC4	Unknown	Public	IDAX	HEK293T
DAXX	Unknown	Public	BING2, DAP6, EAP1	PC3
DDX20	Unknown	Encode	DP103, GEMIN3	K562
DDX5	Unknown	Public	G17P1, HLR1, HUMP68, p68	NTERA2 HELA
DEAF1	SAND domain factors	Encode	MRD24, NUDR, SPN, ZMYND5	K562
DEK	Unknown	Encode	D6S231E	HELA
DIDO1	Unknown	Encode	BYE1, C20orf158, DATF-1, DATF1, DIDO2, DIDO3, DIO-1, DIO1, dJ885L7.8	K562
DNMT3B	Other C4 zinc finger-type factors	Encode	ICF, ICF1, M.HsaIIIB	HEPG2
DPF2	Unknown	Encode	REQ, UBID4, ubi-d4	MCF7 K562
DPPA3	Unknown	Public	Pgc7, STELLA	HEK293T
DUX4	Homeo domain factors	Public	DUX4L	HEK293
E2F1	Fork head / winged helix factors	Public + Encode	E2F-1, RBAP1, RBBP3, RBP3	MESENCHYMAL MCF7 LNCAP HMEC1 HELA
E2F4	Fork head / winged helix factors	Public + Encode	E2F-4	RETINAL MCF7 MCF10A LYMPHOBLASTOID K562 HELA GM12878
E2F5	Fork head / winged helix factors	Encode	E2F-5	K562
E2F6	Fork head / winged helix factors	Encode	E2F-6	K562 HELA ESC A549
E2F7	Fork head / winged helix factors	Public	-	IMR90
EBF1	Rel homology region (RHR) factors	Public + Encode	COE1, EBF, O/E-1, OLF1	MUTUL LCL GM12878 ASC
EED	Unknown	Public + Encode	COGIS, HEED, WAIT1	PROES GM12878
EGLN2	Unknown	Public	EIT6, HIF-PH1, HIFPH1, HPH-1, HPH-3, PHD1	T47D
EGR1	C2H2 zinc finger factors	Encode	AT225, G0S30, KROX-24, NGFI-A, TIS8, ZIF-268, ZNF225	MCF7 K562 ISHIKAWA HCT166 GM12878 ESC
EHF	Tryptophan cluster factors	Public	ESE3, ESE3B, ESEJ	CALU3
ELF1	Tryptophan cluster factors	Public + Encode	EFTUD1, RIA1	SKNSH SKNMC ME1 MCF7 K562 HEPG2 HCT166 GM12878 A549
ELF3	Tryptophan cluster factors	Public	EPR-1, ERT, ESE-1, ESX	PDAC
ELF5	Tryptophan cluster factors	Public	ESE2	T47D
ELK1	Tryptophan cluster factors	Public + Encode	-	MCF7 K562 HELA GM12878 ESC A549
ELK4	Tryptophan cluster factors	Encode	SAP1	HELA HEK293
ELL	Unknown	Public	C19orf17, ELL1, MEN, PPP1R68	HCT166
ELL2	Unknown	Public	MRCCAT1	HELA HCT116
EOMES	T-Box factors	Public	TBR2	ESC
EP300	Unknown	Public + Encode	KAT3B, RSTS2, p300	T47D SKNSH OSTEOBLAST NEURAL MCF7 K562 ISHIKAWA HEPG2 HELA GM12878 ESC A549
EPAS1	Basic helix-loop-helix factors (bHLH)	Public	ECYT4, HIF2A, HLF, MOP2, PASD2, bHLHe73	MACROPHAGE 786O
ERG	Tryptophan cluster factors	Public	erg-3, p55	VCAP TSU1621MT SKNO1 RWPE1 ME1 MCF7 K562 JURKAT CD34 AMLPZ12
ESR1	Nuclear receptors with C4 zinc fingers	Public + Encode	ER, ESR, ESRA, ESTRR, Era, NR3A1	ZR751 VCAP T47D NCIH3396 MDAMB134VI MCF7 ISHIKAWA HCC1428 BREAST
ESR2	Nuclear receptors with C4 zinc fingers	Public	ER-BETA, ESR-BETA, ESRB, ESTRB, Erb, NR3A2	MCF7
ESRRA	Nuclear receptors with C4 zinc fingers	Public + Encode	ERR1, ERRa, ERRalpha, ESRL1, NR3B1	SKBR3 MCF7 K562 HEPG2 GM12878 BT474 A549
ETS1	Tryptophan cluster factors	Public + Encode	ETS-1, EWSR2, c-ets-1, p54	RWPE1 PANC1 K562 HUVEC GM12878 ESC DU145 A549
ETV1	Tryptophan cluster factors	Public + Encode	ER81	RWPE1 LNCAP K562 GIST
ETV4	Tryptophan cluster factors	Encode	E1A-F, E1AF, PEA3, PEAS3	HEPG2
ETV6	Tryptophan cluster factors	Encode	TEL, TEL/ABL, THC5	K562 GM12878
EWSR1	Unknown	Public	EWS, EWS-FLI1, bK984G1.4	HEK293
EZH1	Unknown	Public	KMT6B	PROES
EZH2	Unknown	Public + Encode	ENX-1, ENX1, EZH2b, KMT6, KMT6A, WVS, WVS2	WSUDLCL2 VCAP SUDHL6 SUDHL5 PROES PFEIFFER OCILY7 OCILY1 MYOTUBE MYOBLAST LNCAP KERATINOCYTE KARPAS422 K562 HEPG2 HELA GM12878 FIBROBLAST FARAGE ESC EPITHELIAL ENDOTHELIAL DND41 BCELL ASTROCYTE
FANCL	Unknown	Public	FAAP43, PHF9, POG	JURKAT
FLI1	Tryptophan cluster factors	Public	BDPLT21, EWSR2, SIC-1	UAE TSU1621MT SKNO1 SKNMC NB4 ME1
FOS	Basic leucine zipper factors (bZIP)	Public + Encode	AP-1, C-FOS, p55	MV411 MCF10A K562 HEPG2 HELA GM12878 ENDOTHELIAL
FOSL1	Basic leucine zipper factors (bZIP)	Public + Encode	FRA, FRA1, fra-1	K562 HCT166 ESC BT549
FOSL2	Basic leucine zipper factors (bZIP)	Public + Encode	FRA2	SKNSH MCF7 HFOB HEPG2 ESC A549
FOXA1	Fork head / winged helix factors	Public + Encode	HNF3A, TCF3A	ZR751 VCAP T47D PDAC NCIH3122 MDAMB453 MCF7 LNCAP LIVER ISHIKAWA HUH7 HEPG2 DU145 C42B A549
FOXA2	Fork head / winged helix factors	Public + Encode	HNF3B, TCF3B	PANCREAS LIVER ISLET HEPG2 ESC CACO2 A549
FOXJ2	Fork head / winged helix factors	Encode	FHX	K562
FOXK1	Fork head / winged helix factors	Public	FOXK1L	HEK293T
FOXK2	Fork head / winged helix factors	Encode	ILF, ILF-1, ILF1	MCF7 K562 HEPG2
FOXM1	Fork head / winged helix factors	Public + Encode	FKHL16, FOXM1B, HFH-11, HFH11, HNF-3, INS-1, MPHOSPH2, MPP-2, MPP2, PIG29, TRIDENT	U2OS SKNSH OE33 MDAMB231 MCF7 ISHIKAWA HMEC1 HELA HEK293 GM12878
FOXO1	Fork head / winged helix factors	Public	FKH1, FKHR, FOXO1A	ESC BCELL
FOXP1	Fork head / winged helix factors	Public	12CC4, HSPC215, MFH, QRF1, hFKH1B	VCAP U2932 SUDHL6 SUDHL4 RCK8 PROGENITOR LNCAP ESC
FOXP2	Fork head / winged helix factors	Encode	CAGH44, SPCH1, TNRC10	SKNMC PFSK1
GABPA	Tryptophan cluster factors	Public + Encode	E4TF1-60, E4TF1A, NFT2, NRF2, NRF2A, RCH04A07	VCAP SKNSH RWPE1 MCF7 K562 JURKAT HL60 HEPG2 HELA GM12878 ESC DU145 A549
GATA1	Other C4 zinc finger-type factors	Public + Encode	ERYF1, GATA-1, GF-1, GF1, NF-E1, NFE1, XLANP, XLTDA, XLTT	K562 ERYTHROID ERYTHROBLAST CHRF28811 CD34
GATA2	Other C4 zinc finger-type factors	Public + Encode	DCML, IMD21, MONOMAC, NFE1B	TSU1621MT TF1 SHSY5Y ME1 LNCAP K562 HL60 ENDOTHELIAL CD34
GATA3	Other C4 zinc finger-type factors	Public + Encode	HDR, HDRS	THYMOCYTE T47D SKNSH SHSY5Y RPMI8402 NGP MCF7 KELLY JURKAT CD4 CCRFCEM BE2C A549
GATA4	Other C4 zinc finger-type factors	Public + Encode	ASD2, TACHD, TOF, VSD1	YCC3 KATOIII HEPG2 AGS
GATA6	Other C4 zinc finger-type factors	Public	-	YCC3 PATU8988 LS174T KATOIII HUG1N ESC CACO2 AGS
GATAD1	Other C4 zinc finger-type factors	Public	CMD2B, ODAG, RG083M05.2	HELA
GFI1B	C2H2 zinc finger factors	Public + Encode	BDPLT17, ZNF163B	K562 CD34
GLYR1	Unknown	Public	BM045, HIBDL, N-PAC, NP60	HELA
GRHL2	Grainyhead domain factors	Public	BOM, DFNA28, ECTDS, TFCP2L3	PEO1 OVCAR3 OVCA429 HBE
GSPT2	Unknown	Public	ERF3B, GST2	HEK293T
GTF2B	Unknown	Public + Encode	TF2B, TFIIB	LCL K562 IMR90 HELA
GTF2F1	Unknown	Encode	BTF4, RAP74, TF2F1, TFIIF	MCF7 K562 HELA GM12878 ESC
GTF3C2	Unknown	Encode	TFIIIC-BETA, TFIIIC110	K562 HELA
HBP1	High-mobility group (HMG) domain factors	Encode	-	HEPG2
HCFC1	Unknown	Public + Encode	CFF, HCF, HCF-1, HCF1, HFC1, MRX3, PPP1R89, VCAF	MCF7 K562 HEPG2 HELA GM12878
HDAC1	Unknown	Public + Encode	GON-10, HD1, RPD3, RPD3L1	VCAP K562
HDAC2	Unknown	Public + Encode	HD2, RPD3, YAF1	VCAP MCF7 K562 HEPG2 ESC
HDAC3	Unknown	Public	HD3, RPD3, RPD3-2	VCAP
HDAC6	Unknown	Encode	CPBHM, HD6, JM21, PPP1R90	K562 ESC
HDAC8	Unknown	Encode	CDA07, CDLS5, HD8, HDACL1, MRXS6, RPD3, WTS	K562
HDGF	Unknown	Encode	HMG1L2	K562
HES1	Basic helix-loop-helix factors (bHLH)	Public	HES-1, HHL, HRY, bHLHb39	SW1353
HEXIM1	Unknown	Public	CLP1, EDG1, HIS1, MAQ1	HCT166
HHEX	Homeo domain factors	Encode	HEX, HMPH, HOX11L-PEN, PRH, PRHX	HEPG2
HIF1A	Basic helix-loop-helix factors (bHLH)	Public	HIF-1-alpha, HIF-1A, HIF-1alpha, HIF1, HIF1-ALPHA, MOP1, PASD8, bHLHe78	T47D MACROPHAGE HUVEC H1299 786O
HINFP	C2H2 zinc finger factors	Encode	HiNF-P, MIZF, ZNF743	K562
HMBOX1	Homeo domain factors	Public + Encode	HNF1LA, HOT1, PBHNF	WI38VA13 K562 HELA
HMGN3	Unknown	Encode	PNAS-24, PNAS-25, TRIP7	K562
HNF1B	Homeo domain factors	Public	FJHN, HNF-1-beta, HNF-1B, HNF1beta, HNF2, HPC11, LF-B3, LFB3, MODY5, TCF-2, TCF2, VHNF1	PDAC ESC
HNF4A	Nuclear receptors with C4 zinc fingers	Public + Encode	FRTS4, HNF4, HNF4a7, HNF4a8, HNF4a9, HNF4alpha, MODY, MODY1, NR2A1, NR2A21, TCF, TCF14	LOVO LIVER HEPG2 HCT166 GP5D CACO2
HNF4G	Nuclear receptors with C4 zinc fingers	Encode	NR2A2, NR2A3	HEPG2
HOXA9	Homeo domain factors	Public	ABD-B, HOX1, HOX1.7, HOX1G	SEM
HOXB13	Homeo domain factors	Public	PSGD	LNCAP
HOXB7	Homeo domain factors	Public	HHO.C1, HOX2, HOX2C, Hox-2.3	BT474
HOXC11	Homeo domain factors	Public	HOX3H	MCF7
HSF1	Heat shock factors	Public + Encode	HSTF1	ZR751 WM451LU U2OS SW620 SKBR3 NCIH838 NCIH441 NCIH1703 MO91 MCF7 MCF10A HT29 HMLER HME1 HEPG2 HCT166 HCT15 GM12878 COLON BT20 BREAST BPLER BPE
ICE1	Unknown	Public	KIAA0947	HCT166
ICE2	Unknown	Public	BRCC1, NARG2	HCT166
ID3	Basic helix-loop-helix factors (bHLH)	Encode	HEIR-1, bHLHb25	K562
IKZF1	C2H2 zinc finger factors	Public + Encode	CVID13, Hs.54452, IK1, IKAROS, LYF1, LyF-1, PPP1R92, PRO0758, ZNFN1A1	K562 HSPC HEPG2 GM12878
ILK	Unknown	Encode	HEL-S-28, ILK-1, ILK-2, P59, p59ILK	K562
IRF1	Tryptophan cluster factors	Public + Encode	IRF-1, MAR	PDAC K562 CD14
IRF2	Tryptophan cluster factors	Public + Encode	IRF-2	K562 CD34
IRF3	Tryptophan cluster factors	Encode	IIAE7	HEPG2 HELA GM12878
IRF4	Tryptophan cluster factors	Public + Encode	LSIRF, MUM1, NF-EM5, SHEP8	OCILY3 NCIH929 MM1S GM12878
IRF9	Tryptophan cluster factors	Encode	IRF-9, ISGF3, ISGF3G, p48	K562
JARID2	ARID domain factors	Public	JMJ	UTEIPS7 UTEIPS6 UTEIPS4 UTEIPS11 MRC5 EDOMIPS2 AMIPS8 AMIPS6
JMJD1C	Unknown	Public	KDM3C, TRIP-8, TRIP8	THP1 NB4 KASUMI1 HL60
JMJD6	Unknown	Public	PSR, PTDSR, PTDSR1	HELA HEK293T
JUN	Basic leucine zipper factors (bZIP)	Public + Encode	AP-1, AP1, c-Jun, p39	MDAMB231 MCF7 K562 HEPG2 HELA ESC ENDOTHELIAL BT549 A549
JUNB	Basic leucine zipper factors (bZIP)	Public + Encode	AP-1	KERATINOCYTE K562 GM12878 ESC
JUND	Basic leucine zipper factors (bZIP)	Public + Encode	AP-1	T47D SKNSH PC3 MCF7 K562 HT29 HFOB HEPG2 HELA HCT166 GP5D GM12878 ESC A549
KAT2A	Unknown	Encode	GCN5, GCN5L2, PCAF-b, hGCN5	HELA
KAT2B	Unknown	Encode	CAF, P/CAF, PCAF	K562 HEPG2 A549
KDM1A	Unknown	Public + Encode	AOF2, BHC110, CPRF, KDM1, LSD1	SKNO1 SHSY5Y NCIH526 KERATINOCYTE KASUMI1 K562 HELA
KDM1B	Unknown	Public	AOF1, C6orf193, LSD2, bA204B7.3, dJ298J15.2	HEPG2
KDM4A	Unknown	Encode	JHDM3A, JMJD2, JMJD2A, TDRD14A	ESC
KDM4B	Unknown	Encode	JMJD2B, TDRD14B	K562
KDM4C	Unknown	Public	GASC1, JHDM3C, JMJD2C, TDRD14C	KYSE150
KDM5A	ARID domain factors	Public + Encode	RBBP-2, RBBP2, RBP2	T47D ESC
KDM5B	ARID domain factors	Public + Encode	CT31, JARID1B, PLU-1, PLU1, PPP1R98, PUT1, RBBP2H1A, RBP2-H1	T47D SUM185 SUM159 MDAMB231 MCF7 K562 HCC2157 ESC
KDM6B	Unknown	Public	JMJD3	CUTLL1
KLF1	C2H2 zinc finger factors	Public + Encode	EKLF	K562 ERYTHROID
KLF13	C2H2 zinc finger factors	Encode	BTEB3, FKLF2, NSLP1, RFLAT-1, RFLAT1	K562
KLF3	C2H2 zinc finger factors	Public	BKLF	HEK293
KLF4	C2H2 zinc finger factors	Public	EZF, GKLF	PDAC MCF7 KERATINOCYTE IPSC ESC BJ
KLF5	C2H2 zinc finger factors	Public + Encode	BTEB2, CKLF, IKLF	YCC3 LOVO KATOIII GP5D GM12878 AGS
KLF6	C2H2 zinc finger factors	Public	BCD1, CBA1, COPEB, CPBP, GBF, PAC1, ST12, ZF9	PDAC
KLF9	C2H2 zinc finger factors	Public + Encode	BTEB, BTEB1	MCF7 GBM1A
KMT2A	CXXC zinc finger factors	Public	ALL-1, CXXC7, HRX, HTRX1, MLL, MLL1, MLL1A, TRX1, WDSTS	RSA411 CD34
KMT2B	CXXC zinc finger factors	Public	CXXC10, DYT28, HRX2, MLL1B, MLL2, MLL4, TRX2, WBP-7, WBP7	BCELL
L3MBTL2	Unknown	Public	H-l(3)mbt-l, L3MBT	K562
LDB1	Unknown	Public	CLIM-2, CLIM2, LDB-1, NLI	HEP
LEF1	High-mobility group (HMG) domain factors	Public	LEF-1, TCF10, TCF1ALPHA, TCF7L3	ESC
LHX2	Homeo domain factors	Public	LH2, hLhx2	RETINAL
LMO2	Unknown	Public	LMO-2, RBTN2, RBTNL1, RHOM2, TTG2	TSU1621MT KASUMI1 CCRFCEM
LRWD1	Unknown	Public	CENP-33, ORCA	HELA
LYL1	Basic helix-loop-helix factors (bHLH)	Public	bHLHa18	TSU1621MT THP1 NB4 KASUMI1
MAF	Basic leucine zipper factors (bZIP)	Public	AYGRP, CCA4, CTRCT21, c-MAF	KERATINOCYTE CD4
MAFB	Basic leucine zipper factors (bZIP)	Public	DURS3, KRML, MCTO	KERATINOCYTE ISLET
MAFF	Basic leucine zipper factors (bZIP)	Encode	U-MAF, hMafF	K562 HEPG2 HELA GM12878
MAFG	Basic leucine zipper factors (bZIP)	Encode	hMAF	K562
MAFK	Basic leucine zipper factors (bZIP)	Public + Encode	NFE2U, P18	OCILY7 MCF7 K562 IMR90 HEPG2 HELA GM12878 ESC A549
MAML3	Unknown	Public	CAGH3, ERDA3, GDN, MAM-2, MAM2, TNRC3	SKNSH
MAX	Basic helix-loop-helix factors (bHLH)	Public + Encode	bHLHd4	U87MG SKNSH P4936 NCIH2171 NB4 MM1S MCF7 K562 ISHIKAWA HEPG2 HELA HCT166 H128 GM12878 ESC ENDOTHELIAL A549
MAZ	C2H2 zinc finger factors	Encode	PUR1, Pur-1, SAF-1, SAF-2, SAF-3, ZF87, ZNF801, Zif87	MCF7 K562 IMR90 HEPG2 HELA GM12878 A549
MBD1	CXXC zinc finger factors	Encode	CXXC3, PCM1, RFT	HEPG2
MBD2	Unknown	Public	DMTase, NY-CO-41	MCF7 HMLER HMEC1 HELA
MBD3	Unknown	Public	-	MCF7 HELA
MBD4	Unknown	Encode	MED1	HEPG2
MDM2	Unknown	Public	ACTFS, HDMX, hdm2	H1299
MED1	Unknown	Public	CRSP1, CRSP200, DRIP205, DRIP230, PBP, PPARBP, PPARGBP, RB18A, TRAP220, TRIP2	U87MG SGBS P4936 OCILY1 NCIH2171 MYOBLAST MOLM14 MM1S MCF7 LS180 JURKAT ESC CD4
MED26	Unknown	Public	CRSP7, CRSP70	U2OS
MEF2A	MADS box factors	Encode	ADCAD1, RSRFC4, RSRFC9, mef2	SKNSH K562 GM12878
MEF2B	MADS box factors	Public	RSRFR2	OCILY7 KARPAS422 DOHH2
MEF2C	MADS box factors	Public + Encode	C5DELq14.3, DEL5q14.3	HUVEC GM12878
MEIS1	Homeo domain factors	Public	-	SEM HSPC CHRF28811
MEIS2	Homeo domain factors	Encode	CPCMR, HsT18361, MRG1	K562
MIER1	Tryptophan cluster factors	Encode	ER1, MI-ER1	K562
MITF	Basic helix-loop-helix factors (bHLH)	Public + Encode	CMM8, COMMAD, MI, WS2, WS2A, bHLHe32	RETINAL MELANOCYTE K562 501MEL
MLLT1	Unknown	Encode	ENL, LTG19, YEATS1	MCF7 K562
MLLT3	Unknown	Public	AF9, YEATS3	NPCS CD34
MNT	Basic helix-loop-helix factors (bHLH)	Encode	MAD6, MXD6, ROX, bHLHd3	MCF7
MTA1	Other C4 zinc finger-type factors, Tryptophan cluster factors	Encode	-	MCF7
MTA2	Other C4 zinc finger-type factors, Tryptophan cluster factors	Encode	MTA1L1, PID	MCF7 K562
MTA3	Other C4 zinc finger-type factors, Tryptophan cluster factors	Encode	-	K562 GM12878
MXI1	Basic helix-loop-helix factors (bHLH)	Encode	MAD2, MXD2, MXI, bHLHc11	SKNSH NEURAL K562 IMR90 HEPG2 HELA GM12878 ESC
MYB	Tryptophan cluster factors	Public + Encode	Cmyb, c-myb, c-myb_CDS, efg	MOLT3 JURKAT GM12878 CD4
MYBL2	Tryptophan cluster factors	Public + Encode	B-MYB, BMYB	HMEC1 HEPG2
MYC	Basic helix-loop-helix factors (bHLH)	Public + Encode	MRTL, MYCC, bHLHe39, c-Myc	U87MG U2OS RAMOS RAJI PAVE P4936 NCIH2171 NB4 MM1S MDAMB453 MDAMB231 MCF7 MCF10A LS174T LOVO LCL K562 JURKAT IMEC HFF HEPG2 HELA H128 GP5D GM12878 ESC ENDOTHELIAL CD34 CA46 BREAST BLUE1 BL41 BJ BE2C A549
MYCN	Basic helix-loop-helix factors (bHLH)	Public	MODED, N-myc, NMYC, ODED, bHLHe37	SMSKCNR SMSKCN SHSY5Y SHEP21 NGP KELLY BE2C
MYNN	C2H2 zinc finger factors	Encode	OSZF, SBBIZ1, ZBTB31, ZNF902	K562
MYOD1	Basic helix-loop-helix factors (bHLH)	Public	MYF3, MYOD, PUM, bHLHc1	RHABDOMYOSARCOMA MYOBLAST
NANOG	Homeo domain factors	Public + Encode	-	ESC
NBN	Unknown	Encode	AT-V1, AT-V2, ATV, NBS, NBS1, P95	K562
NCOA1	Basic helix-loop-helix factors (bHLH)	Public + Encode	F-SRC-1, KAT13A, RIP160, SRC1, bHLHe42, bHLHe74	MCF7 LS180 K562
NCOA2	Basic helix-loop-helix factors (bHLH)	Public	GRIP1, KAT13C, NCoA-2, SRC2, TIF2, bHLHe75	MCF7
NCOA3	Basic helix-loop-helix factors (bHLH)	Public	ACTR, AIB-1, AIB1, CAGH16, CTG26, KAT13B, RAC3, SRC-3, SRC3, TNRC14, TNRC16, TRAM-1, bHLHe42, pCIP	NCIH3396 MCF7
NCOR	Tryptophan cluster factors	Public	ncor1 + ncor2	OCILY1 LS180 HEK293T
NCOR1	Tryptophan cluster factors	Encode	N-CoR, N-CoR1, PPP1R109, TRAC1, hN-CoR	K562
NCOR2	Tryptophan cluster factors	Public	CTG26, N-CoR2, SMAP270, SMRT, SMRTE, SMRTE-tau, TNRC14, TRAC, TRAC-1, TRAC1	OCILY1 LS180 BCELL
NELFA	Unknown	Public	NELF-A, P/OKcl.15, WHSC2	BT474
NEUROD1	Basic helix-loop-helix factors (bHLH)	Public + Encode	BETA2, BHF-1, MODY6, NEUROD, bHLHa3	NCIH524 K562
NFATC1	Rel homology region (RHR) factors	Public + Encode	NF-ATC, NF-ATc1.2, NFAT2, NFATc	HUVEC GM12878
NFE2	Basic leucine zipper factors (bZIP)	Public + Encode	NF-E2, p45	PROES K562 GM12878 ERYTHROID
NFE2L1	Basic leucine zipper factors (bZIP)	Encode	LCR-F1, NRF1, TCF11	K562
NFE2L2	Basic leucine zipper factors (bZIP)	Public + Encode	HEBP1, IMDDHH, NRF2	K562 HEPG2 A549 A375
NFIC	SMAD/NF-1 DNA-binding domain factors	Encode	CTF, CTF5, NF-I, NFI	SKNSH ISHIKAWA HEPG2 GM12878
NFKB1	Rel homology region (RHR) factors	Public	CVID12, EBP-1, KBF1, NF-kB1, NF-kappa-B, NF-kappaB, NFKB-p105, NFKB-p50, NFkappaB, p105, p50	L1236
NFKB2	Rel homology region (RHR) factors	Public	CVID10, H2TF1, LYT-10, LYT10, NF-kB2, p100, p49/p100, p52	L1236
NFKBIA	Rel homology region (RHR) factors	Public	IKBA, MAD-3, NFKBI	DERMAL
NFRKB	Unknown	Encode	INO80G	K562
NFYA	Heteromeric CCAAT-binding factors	Public + Encode	CBF-A, CBF-B, HAP2, NF-YA	K562 HELA GM12878
NFYB	Heteromeric CCAAT-binding factors	Public + Encode	CBF-A, CBF-B, HAP3, NF-YB	K562 HELA GM12878
NIPBL	Unknown	Public	CDLS, CDLS1, IDN3, IDN3-B, Scc2	LCL GP5D ESC
NKX2-1	Homeo domain factors	Public	BCH, BHC, NK-2, NKX2.1, NKX2A, NMTC1, T/EBP, TEBP, TITF1, TTF-1, TTF1	NCIH3122 NCIH2087 NCIH1819
NKX2-2	Homeo domain factors	Public	NKX2.2,NKX2B	ISLET
NKX3-1	Homeo domain factors	Public	BAPX2, NKX3, NKX3.1, NKX3A	LNCAP ISLET
NME2	Unknown	Public	NDKB, NDPK-B, NDPKB, NM23-H2, NM23B, PUF	A549
NONO	NonO domain factors	Encode	MRXS34, NMT55, NRB54, P54, P54NRB, PPP1R114	MCF7 K562
NOTCH1	Unknown	Public	AOS5, AOVD1, TAN1, hN1	HPBALL CUTLL1 CD34
NR1H2	Nuclear receptors with C4 zinc fingers	Public	LXR-b, LXRB, NER, NER-I, RIP15, UNR	HT29
NR1H3	Nuclear receptors with C4 zinc fingers	Public	LXR-a, LXRA, RLD-1	THP1 SGBS
NR2C2	Nuclear receptors with C4 zinc fingers	Public + Encode	TAK1, TR4	WI38VA13 K562 HEPG2 HELA GM12878 ERYTHROID
NR2F1	Nuclear receptors with C4 zinc fingers	Public + Encode	BBOAS, BBSOAS, COUP-TFI, EAR-3, EAR3, ERBAL3, NR2F2, SVP44, TCFCOUP1, TFCOUP1	MCF7 K562
NR2F2	Nuclear receptors with C4 zinc fingers	Public + Encode	ARP1, CHTD4, COUPTFB, COUPTFII, NF-E3, NR2F1, SVP40, TFCOUP2	WI38VA13 STROMA MCF7 K562 HEPG2 HELA
NR2F6	Nuclear receptors with C4 zinc fingers	Encode	EAR-2, EAR2, ERBAL2	HEPG2
NR3C1	Nuclear receptors with C4 zinc fingers	Public + Encode	GCCR, GCR, GCRST, GR, GRL	ZR751 U2OS T47D RSA411 NALM6 MM1S MCF7 LNCAP LCL K562 ISHIKAWA IMR90 HMSC HEPG2 HELAB2 GM12878 A549
NR4A1	Nuclear receptors with C4 zinc fingers	Public + Encode	GFRP1, HMR, N10, NAK-1, NGFIB, NP10, NUR77, TR3	KASUMI1 K562
NR5A2	Nuclear receptors with C4 zinc fingers	Public	B1F, B1F2, CPF, FTF, FTZ-F1, FTZ-F1beta, LRH-1, LRH1, hB1F-2	MCF7
NRF1	Uncharacterized	Public + Encode	ALPHA-PAL	T47D SKNSH NAMALWA MCF7 K562 HMEC1 HEPG2 HELA HCC1954 GM12878 ESC
NRIP1	Unknown	Public	RIP140	MCF7
NSD2	High-mobility group (HMG) domain factors	Encode	KMT3F, KMT3G, MMSET, REIIBP, TRX5, WHS, WHSC1	K562
OCA2	Unknown	Public	BEY, BEY1, BEY2, BOCA, D15S12, EYCL, EYCL2, EYCL3, HCL3, P, PED, SHEP1	HBL1
ONECUT1	Homeo domain factors	Public	HNF-6, HNF6, HNF6A	LIVER ESC
OTX2	Homeo domain factors	Public	CPHD6, MCOPS5	RETINAL
OVOL2	C2H2 zinc finger factors	Public	CHED, CHED1, CHED2, EUROIMAGE566589, PPCD1, ZNF339	HCET HCEC
PALB2	Unknown	Public	FANCN, PNCA3	MCF10A
PAX5	Paired box factors	Public + Encode	ALL3, BSAP	OCILY7 GM12892 GM12891 GM12878 DOHH2
PAX6	Paired box factors	Public	AN, AN2, ASGD5, D11S812E, FVH1, MGDA, WAGR	RETINAL
PAX8	Paired box factors	Public + Encode	-	OVSAHO KURAMOCHI K562 JHOS4 FT33 FT246 FT194
PBX2	Homeo domain factors	Encode	G17, HOX12, PBX2MHC	K562 HEPG2
PBX3	Homeo domain factors	Encode	-	SKNSH GM12878 A549
PCGF2	Unknown	Public	MEL-18, RNF110, ZNF144	FIBROBLAST
PDX1	Homeo domain factors	Public	GSF, IDX-1, IPF1, IUF1, MODY4, PAGEN1, PDX-1, STF-1	ISLET ESC
PGR	Nuclear receptors with C4 zinc fingers	Public	NR3C3, PR	T47D MCF7 LEIOMYOMA HUVEC ESC AB32
PHF8	Unknown	Public + Encode	JHDM1F, KDM7B, MRXSSD, ZNF422	K562 HELA ESC
PIAS1	Unknown	Public	DDXBP1, GBP, GU/RH-II, ZMIZ3	LNCAP
PKNOX1	Homeo domain factors	Encode	PREP1, pkonx1c	K562
PML	Unknown	Encode	MYL, PP8675, RNF71, TRIM19	MCF7 K562 GM12878
POU2F1	Homeo domain factors	Public	OCT1, OTF1, oct-1B	IMR90
POU2F2	Homeo domain factors	Public + Encode	OCT2, OTF2, Oct-2	HNPC HBL1 GM12891 GM12878 BJAB
POU4F2	Homeo domain factors	Public	BRN3.2, BRN3B, Brn-3b	HNPC
POU5F1	Homeo domain factors	Public + Encode	OCT3, OCT4, OTF-3, OTF3, OTF4, Oct-3, Oct-4	NCCIT K562 IPSC ESC BJ BGO3
PPARG	Nuclear receptors with C4 zinc fingers	Public	CIMT1, GLM1, NR1C3, PPARG1, PPARG2, PPARgamma	WPMY1 THP1 SGBS MACROPHAGE HUVEC HT29 ASC
PPARGC1A	Unknown	Encode	LEM6, PGC-1(alpha), PGC-1alpha, PGC-1v, PGC1, PGC1A, PPARGC1	HEPG2
PRDM1	C2H2 zinc finger factors	Encode	BLIMP1, PRDI-BF1	HELA
PRDM14	C2H2 zinc finger factors	Public	PFM11	NCCIT ESC
PRKDC	Unknown	Public	DNA-PKcs, DNAPK, DNPK1, HYRC, HYRC1, IMD26, XRCC7, p350	MCF7 FIBROBLAST
PROX1	Homeo domain factors	Public	-	SW480
PTRF	Unknown	Encode	CAVIN1 , CAVIN, CGL4, FKSG13, PTRF, cavin-1	K562
PTTG1	Unknown	Encode	EAP1, HPTTG, PTTG, TUTR1	K562
PYGO2	Unknown	Encode	1190004M21Rik	K562
RAD21	Unknown	Public + Encode	CDLS4, HR21, HRAD21, MCD1, NXP1, SCC1, hHR21	THP1 SKNSH NEURAL MCF7 LOVO K562 ISHIKAWA IMR90 HEPG2 HELA HCT166 GP5D GM12878 ESC CHRF28811 A549
RAD51	Unknown	Public + Encode	BRCC5, FANCR, HRAD51, HsRad51, HsT16930, MRMV2, RAD51A, RECA	U2OS K562
RARA	Nuclear receptors with C4 zinc fingers	Public	NR1B1, RAR	TSU1621MT SKNSH
RB1	Unknown	Public + Encode	OSRC, PPP1R130, RB, p105-Rb, pRb, pp110	K562 GM12878 FIBROBLAST
RBBP5	Unknown	Encode	RBQ3, SWD1	K562 ESC
RBP2	Unknown	Public	CRABP-II, CRBP2, CRBPII, RBPC2	U937
RBPJ	Rel homology region (RHR) factors	Public	AOS3, CBF1, IGKJRB, IGKJRB1, KBF2, RBP-J, RBPJK, RBPSUH, SUH, csl	NHEK MUTUL LCL GIC FIBROBLAST CUTLL1
RCOR1	Tryptophan cluster factors	Public + Encode	COREST, RCOR	MCF7 KERATINOCYTE K562 IMR90 HEPG2 HELA GM12878 A549
RELA	Rel homology region (RHR) factors	Public + Encode	NFKB3, p65	SGBS MCF7 LNCAP L1236 KB K562 IMR90 HUVEC HELAB2 HDF GM19193 GM19099 GM18951 GM18526 GM18505 GM15510 GM12892 GM12891 GM12878 GM10847 CD4 AC16
RELB	Rel homology region (RHR) factors	Public	I-REL, IMD53, IREL, REL-B	L1236
REST	C2H2 zinc finger factors	Public + Encode	GINGF5, HGF5, NRSF, WT6, XBR	SKNSH PFSK1 PANC1 NEURAL NCIH295R MCF7 K562 ISHIKAWA HL60 HEPG2 HEPATOCYTE HELA HCT166 GP5D GM12878 ESC CD4 A549
RFX1	Fork head / winged helix factors	Encode	EFC, RFX	HEPG2
RFX2	Fork head / winged helix factors	Public	-	GP5D
RFX5	Fork head / winged helix factors	Encode	-	SKNSH MCF7 K562 IMR90 HEPG2 HELA GM12878 ESC A549
RNF2	Unknown	Public + Encode	BAP-1, BAP1, DING, HIPI3, RING1B, RING2	NCCIT K562 HMELBRAF HEK293T GM12878 ESC
RUNX	Runt domain factors	Public	RUNX1 + RUNX2 + RUNX3	JURKAT
RUNX1	Runt domain factors	Public + Encode	AML1, AML1-EVI-1, AMLCR1, CBF2alpha, CBFA2, EVI-1, PEBP2aB, PEBP2alpha	VCAP U937 TSU1621MT SKNO1 ME1 MCF7 KASUMI1 K562 JURKAT HL60 CD34 CCRFCEM BONE AMLBLAST
RUNX1T1	Unknown	Public	AML1-MTG8, AML1T1, CBFA2T1, CDR, ETO, MTG8, ZMYND2	KASUMI1
RUNX2	Runt domain factors	Public	AML3, CBF-alpha-1, CBFA1, CCD, CCD1, CLCD, OSF-2, OSF2, PEA2aA, PEBP2aA	IMSC3 C42B
RUNX3	Runt domain factors	Encode	AML2, CBFA3, PEBP2aC	GM12878
RXR	Nuclear receptors with C4 zinc fingers	Public	RXRA + RXRB + RXRG , NR2B1 , DAUDI6, H-2RIIBP, NR2B2, RCoR-1 , NR2B3, RXRC	TSU1621MT THP1 MACROPHAGE LS180
RXRA	Nuclear receptors with C4 zinc fingers	Encode	NR2B1	SKNSH HEPG2 GM12878 ESC
RYBP	Unknown	Public	AAP1, APAP-1, DEDAF, YEAF1	HEK293T
SAP30	Unknown	Encode	-	K562 ESC
SATB1	Homeo domain factors	Public	-	SHSY5Y
SETDB1	Unknown	Public + Encode	ESET, H3-K9-HMTase4, KG1T, KMT1E, TDRD21	WN8532 U2OS K562
SFMBT1	Unknown	Public	RU1, SFMBT, hSFMBT	HELA
SGF29	Unknown	Public	CCDC101, STAF36, TDRD29	HELA
SIN3A	Unknown	Encode	WITKOS	SKNSH PFSK1 PANC1 MCF7 K562 HEPG2 HCT166 GM12878 ESC A549
SIN3B	Unknown	Encode	-	K562 HEPG2
SIRT3	Unknown	Public	SIR2L3	U2OS
SIRT6	Unknown	Encode	SIR2L6	K562 ESC
SIX2	Homeo domain factors	Public	-	KIDNEY HEK
SIX5	Homeo domain factors	Encode	BOR2, DMAHP	K562 GM12878 ESC A549
SMAD1	SMAD/NF-1 DNA-binding domain factors	Public + Encode	BSP-1, BSP1, JV4-1, JV41, MADH1, MADR1	K562 CD34 BGO3
SMAD2	SMAD/NF-1 DNA-binding domain factors	Public + Encode	JV18, JV18-1, MADH2, MADR2, hMAD-2, hSMAD2	WA09 K562 ESC ENDODERM
SMAD3	SMAD/NF-1 DNA-binding domain factors	Public	HSPC193, HsT17436, JV15-2, LDS1C, LDS3, MADH3	NCIH441 LX2 ESC ENDODERM BGO3
SMAD4	SMAD/NF-1 DNA-binding domain factors	Public	DPC4, JIP, MADH4, MYHRS	ESC ENDODERM
SMAD5	SMAD/NF-1 DNA-binding domain factors	Encode	DWFC, JV5-1, MADH5	K562 GM12878
SMARCA4	Unknown	Public + Encode	BAF190, BAF190A, BRG1, CSS4, MRD16, RTPS2, SNF2, SNF2L4, SNF2LB, SWI2, hSNF2b	MCF10A K562 HELA 501MEL
SMARCB1	Unknown	Public + Encode	BAF47, CSS3, INI1, MRD15, PPP1R144, RDT, RTPS1, SNF5, SNF5L1, SWNTS1, Sfh1p, Snr1, hSNFS	K562 HEPG2 HELA
SMARCC1	Tryptophan cluster factors	Encode	BAF155, CRACC1, Rsc8, SRG3, SWI3	HELA
SMARCC2	Tryptophan cluster factors	Encode	BAF170, CRACC2, Rsc8	HELA
SMC1A	Unknown	Public	CDLS2, DXS423E, SB1.8, SMC1, SMC1L1, SMC1alpha, SMCB	LCL BCBL1
SMC3	Unknown	Public + Encode	BAM, BMH, CDLS3, CSPG6, HCAP, SMC3L1	U937 SKNSH NEURAL K562 HL60 HEPG2 HELA GP5D GM12878
SMC4	Unknown	Public	CAP-C, CAPC, SMC-4, SMC4L1	HELA
SNAI2	C2H2 zinc finger factors	Public	SLUG, SLUGH, SLUGH1, SNAIL2, WS2D	KERATINOCYTE
SNAPC1	Unknown	Public	PTFgamma, SNAP43	MCF10A
SNAPC4	Tryptophan cluster factors	Public	PTFalpha, SNAP190	MCF10A
SND1	Unknown	Public	TDRD11, Tudor-SN, p100	NHEK
SOX10	High-mobility group (HMG) domain factors	Public	DOM, PCWH, WS2E, WS4, WS4C	501MEL
SOX11	High-mobility group (HMG) domain factors	Public	MRD27	GRANTA519
SOX13	High-mobility group (HMG) domain factors	Encode	ICA12, Sox-13	HEPG2
SOX2	High-mobility group (HMG) domain factors	Public	ANOP3, MCOPS3	TT RENVM KYSE70 IPSC HNSC GLIOMA ESC BJ
SOX6	High-mobility group (HMG) domain factors	Encode	HSSOX6, SOXD	K562
SOX9	High-mobility group (HMG) domain factors	Public	CMD1, CMPD1, SRA1, SRXX2, SRXY10	HT29
SP1	C2H2 zinc finger factors	Public + Encode	-	K562 HL60 HEPG2 HEK293T HCT166 GM12878 ESC A549
SP2	C2H2 zinc finger factors	Public + Encode	-	K562 HEPG2 HEK293T ESC
SP4	C2H2 zinc finger factors	Encode	HF1B, SPR-1	ESC
SPI1	Tryptophan cluster factors	Public + Encode	OF, PU.1, SFPI1, SPI-1, SPI-A	U937 THP1 RSA411 OCILY7 OCILY3 OCILY10 NCIH929 MONOCYTE ME1 MACROPHAGE LCL KASUMI1 K562 HL60 GM12891 GM12878 DOHH2 DENDRITE CD34
SPIB	Tryptophan cluster factors	Public	SPI-B	OCILY3 OCILY10
SREBF1	Basic helix-loop-helix factors (bHLH)	Encode	SREBP1, bHLHd1	MCF7 K562 HEPG2 GM12878 A549
SREBF2	Basic helix-loop-helix factors (bHLH)	Encode	SREBP-2, SREBP2, bHLHd2	HEPG2 HELA GM12878 A549
SRF	MADS box factors	Encode	MCM1	MCF7 K562 ISHIKAWA HEPG2 HCT166 GM12878 ESC
SSRP1	High-mobility group (HMG) domain factors	Encode	FACT, FACT80, T160	HEPG2
STAG1	Unknown	Public	MRD47, SA1, SCC3A	U937 MCF7 HSPC HL60 HEPG2 ERYTHROID CHRF28811
STAT1	STAT domain factors	Public + Encode	CANDF7, IMD31A, IMD31B, IMD31C, ISGF-3, STAT91	K562 HELA GM12878 CD14
STAT2	STAT domain factors	Encode	IMD44, ISGF-3, P113, STAT113	K562
STAT3	STAT domain factors	Public + Encode	ADMIO, ADMIO1, APRF, HIES	U2932 SUDHL6 SUDHL4 SUDHL2 SUDHL10 OCILY7 OCILY3 OCILY19 OCILY10 MCF10A HELA GM12878 ESC
STAT5A	STAT domain factors	Public + Encode	MGF, STAT5	MV411 K562 GM12878
STAT5B	STAT domain factors	Public	STAT5	CD8
SUPT20H	Unknown	Encode	C13, C13orf19, FAM48A, FP757, P38IP, SPT20	HELA GM12878
SUZ12	Unknown	Public + Encode	CHET9, JJAZ1	PROES NCCIT LNCAP K562 HEPG2 GM12878 ESC
SVIL	Unknown	Public	-	SHSY5Y
T	T-Box factors	Public	SAVA, TFT	ESC
TAF1	High-mobility group (HMG) domain factors	Encode	BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, MRXS33, N-TAF1, NSCL2, OF, P250, TAF(II)250, TAF2A, TAFII-250, TAFII250, XDP	SKNSH PFSK1 NEURAL MCF7 K562 ISHIKAWA HEPG2 HELA GM12892 GM12891 GM12878 ESC A549
TAF2	Unknown	Public	CIF150, MRT40, TAF2B, TAFII150	ESC
TAF3	Unknown	Public	TAF140, TAFII-140, TAFII140	HCT166
TAF7	Unknown	Encode	TAF2F, TAFII55	K562 ESC
TAL1	Basic helix-loop-helix factors (bHLH)	Public + Encode	SCL, TCL5, bHLHa17, tal-1	TSU1621MT RPMI8402 PROES PRIMA5 PRIMA2 MOLT3 ME1 K562 JURKAT HSPC ERYTHROID ECFC CHRF28811 CD34 CCRFCEM
TARDBP	Unknown	Encode	ALS10, TDP-43	K562 GM12878
TBL1X	Unknown	Public	EBI, SMAP55, TBL1	HEK293T
TBL1XR1	Unknown	Encode	C21, DC42, IRA1, MRD41, TBLR1	K562 HEPG2 GM12878
TBP	TATA-binding proteins	Public + Encode	GTF2D, GTF2D1, HDL4, SCA17, TFIID	ME1 K562 HEPG2 HELA GM12878 ESC
TBX21	T-Box factors	Public + Encode	T-PET, T-bet, TBET, TBLYM	GM12878 CD4
TCF12	Basic helix-loop-helix factors (bHLH)	Public + Encode	CRS3, HEB, HTF4, HsT17266, TCF-12, bHLHb20	SKNSH RPMI8402 ME1 MCF7 KASUMI1 JURKAT ISHIKAWA HEPG2 GM12878 ESC CCRFCEM A549
TCF25	Uncharacterized	Encode	FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049	HEPG2
TCF3	Basic helix-loop-helix factors (bHLH)	Public + Encode	AGM8, E2A, E47, ITF1, TCF-3, VDIR, bHLHb21	RPMI8402 KASUMI1 JURKAT GM12878 CCRFCEM
TCF4	Basic helix-loop-helix factors (bHLH)	Public	E2-2, FECD3, ITF-2, ITF2, PTHS, SEF-2, SEF2, SEF2-1, SEF2-1A, SEF2-1B, SEF2-1D, TCF-4, bHLHb19	LS180
TCF7	High-mobility group (HMG) domain factors	Encode	TCF-1	K562 GM12878
TCF7L2	High-mobility group (HMG) domain factors	Public + Encode	TCF-4, TCF4	PANC1 MDAMB453 MCF7 LNCAP HEPG2 HELA HEK293 HCT166 CD34
TEAD1	TEA domain factors	Public	AA, NTEF-1, REF1, TCF-13, TCF13, TEAD-1, TEF-1	PANCREAS MSTO HUCCT1 HFOB CCLP1
TEAD2	TEA domain factors	Encode	ETF, TEAD-2, TEF-4, TEF4	K562
TEAD4	TEA domain factors	Public + Encode	EFTR-2, RTEF1, TCF13L1, TEF-3, TEF3, TEFR-1, hRTEF-1B	WA09 SNU216 SKNSH MKN28 MDAMB231 MCF7 K562 ISHIKAWA HUCCT1 HEPG2 HCT166 ESC BE2C A549
TERF1	Unknown	Public	PIN2, TRBF1, TRF, TRF1, hTRF1-AS, t-TRF1	LCL
TERF2	Unknown	Public	TRBF2, TRF2	WI38VA13 LCL HELA
TET3	Unknown	Public	hCG_40738	HEK293T
TFAP2A	Basic helix-span-helix factors (bHSH)	Public	AP-2, AP-2alpha, AP2TF, BOFS, TFAP2	MCF7
TFAP2C	Basic helix-span-helix factors (bHSH)	Public	AP2-GAMMA, ERF1, TFAP2G, hAP-2g	SKBR3 MDAMB453 MCF7 BT474 A375
TFAP4	Basic helix-loop-helix factors (bHLH)	Public + Encode	AP-4, bHLHc41	LNCAP KASUMI1 HEPG2 DLD1
TFDP1	Fork head / winged helix factors	Encode	DILC, DP1, DRTF1, Dp-1	K562
TGIF2	Homeo domain factors	Encode	-	HEPG2
THAP1	C2CH THAP-type zinc finger factors	Encode	DYT6	K562
THAP11	C2CH THAP-type zinc finger factors	Public	CTG-B43a, CTG-B45d, HRIHFB2206, RONIN	HELA
TLE3	Unknown	Public	ESG, ESG3, GRG3, HsT18976	MCF7
TOP1	Unknown	Public	TOPI	LNCAP HCT116
TP53	p53 domain factors	Public	BCC7, LFS1, P53, TRP53	U2OS SW480 SAOS2 NCIH1299 MCF7 KERATINOCYTE IMR90 HEPG2 HCT166 HCT116 GM06170 GM00011 ESC BC3
TP63	p53 domain factors	Public	AIS, B(p51A), B(p51B), EEC3, KET, LMS, NBP, OFC8, RHS, SHFM4, TP53CP, TP53L, TP73L, p40, p51, p53CP, p63, p73H, p73L	TT MDAMB231 MCF10A KYSE70 KERATINOCYTE HCC95 HACAT EP156T
TP73	p53 domain factors	Public	P73	SAOS2
TRIM22	Unknown	Encode	GPSTAF50, RNF94, STAF50	GM12878
TRIM24	Unknown	Public	PTC6, RNF82, TF1A, TIF1, TIF1A, TIF1ALPHA, hTIF1	LNCAP
TRIM28	Unknown	Public + Encode	KAP1, PPP1R157, RNF96, TF1B, TIF1B	WIBR3 U2OS TB40E K562 HEK293 HCT166
TRRAP	Unknown	Public	PAF350/400, PAF400, STAF40, TR-AP, Tra1	HELA
TSC22D4	Basic leucine zipper factors (bZIP)	Encode	THG-1, THG1, TILZ2	K562
TWIST1	Basic helix-loop-helix factors (bHLH)	Public	ACS3, BPES2, BPES3, CRS, CRS1, CSO, SCS, SWCOS, TWIST, bHLHa38	SHEP21 BE2C
UBN1	Unknown	Public	VT, VT4	HELA
UBTF	High-mobility group (HMG) domain factors	Public + Encode	CONDBA, NOR-90, UBF, UBF-1, UBF1, UBF2	K562 GM12878 ESC
USF1	Basic helix-loop-helix factors (bHLH)	Encode	FCHL, FCHL1, HYPLIP1, MLTF, MLTFI, UEF, bHLHb11	SKNSH K562 ISHIKAWA HEPG2 HCT166 GM12878 ESC A549
USF2	Basic helix-loop-helix factors (bHLH)	Encode	FIP, bHLHb12	K562 HEPG2 HELA GM12878 ESC A549
USP7	Unknown	Public	HAUSP, TEF1	HEK293T
VDR	Nuclear receptors with C4 zinc fingers	Public	NR1I1, PPP1R163	THP1 LX2 LS180 LNCAP LCLGM10861
WRNIP1	Unknown	Encode	WHIP, bA420G6.2	GM12878
XBP1	Basic leucine zipper factors (bZIP)	Public	TREB-5, TREB5, XBP-1, XBP2	T47D MDAMB231 HS578T
YAP1	Unknown	Public	COB1, YAP, YAP2, YAP65, YKI	MSTO MDAMB231 HUCCT1 CCLP1
YY1	C2H2 zinc finger factors	Public + Encode	DELTA, GADEVS, INO80S, NF-E1, UCRBP, YIN-YANG-1	SKNSH NT2D1 LIVER K562 ISHIKAWA HEPG2 HELA HCT166 GM12892 GM12891 GM12878 ESC A549
ZBED1	C2H2 zinc finger factors	Encode	ALTE, DREF, TRAMP, hDREF	K562 GM12878
ZBTB11	C2H2 zinc finger factors	Encode	ZNF-U69274, ZNF913	MCF7 K562
ZBTB16	C2H2 zinc finger factors	Public	PLZF, ZNF145	ESC
ZBTB33	C2H2 zinc finger factors	Encode	ZNF-kaiso, ZNF348	SKNSH K562 HEPG2 HCT166 GM12878 A549
ZBTB7A	C2H2 zinc finger factors	Encode	FBI-1, FBI1, LRF, TIP21, ZBTB7, ZNF857A, pokemon	K562 ISHIKAWA HEPG2
ZC3H11A	Unknown	Encode	ZC3HDC11A	K562 A549
ZC3H8	C3H zinc finger factors	Public	Fliz1, ZC3HDC8	HCT166
ZEB1	Homeo domain factors	Public + Encode	AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3, TCF8, ZFHEP, ZFHX1A	PDAC HEPG2 GM12878
ZEB2	Homeo domain factors	Encode	HSPC082, SIP-1, SIP1, SMADIP1, ZFHX1B	K562
ZFP36	Unknown	Encode	G0S24, GOS24, NUP475, RNF162A, TIS11, TTP, zfp-36	HELA GM12878 A549
ZFX	C2H2 zinc finger factors	Public + Encode	ZNF926	RPMI8402 NOMO1 K562 DAOY
ZHX1	Homeo domain factors	Encode	-	K562 HELA
ZHX2	Homeo domain factors	Encode	AFR1, RAF	HEPG2
ZKSCAN1	C2H2 zinc finger factors	Encode	KOX18, PHZ-37, ZNF139, ZNF36, ZSCAN33	MCF7 K562 HEPG2 HELA
ZMIZ1	Unknown	Encode	MIZ, RAI17, TRAFIP10, ZIMP10	K562
ZMYND11	Unknown	Public	BRAM1, BS69, MRD30	U2OS HELA
ZNF143	C2H2 zinc finger factors	Public + Encode	SBF, STAF, pHZ-1	MCF7 K562 HPBALL HEPG2 HELA HEK293T GM12878 FLP76 FLP143HA ESC CUTLL1
ZNF165	C2H2 zinc finger factors	Public	CT53, LD65, ZSCAN7	WHIM12
ZNF175	C2H2 zinc finger factors	Encode	OTK18	K562 HEPG2
ZNF197	C2H2 zinc finger factors	Encode	D3S1363E, P18, VHLaK, ZKSCAN9, ZNF166, ZNF20, ZSCAN41	K562
ZNF207	Unknown	Encode	BuGZ, hBuGZ	GM12878
ZNF217	C2H2 zinc finger factors	Encode	ZABC1	MCF7
ZNF24	C2H2 zinc finger factors	Encode	KOX17, RSG-A, ZNF191, ZSCAN3, Zfp191	K562
ZNF263	C2H2 zinc finger factors	Encode	FPM315, ZKSCAN12, ZSCAN44	K562 HEK293
ZNF274	C2H2 zinc finger factors	Encode	HFB101, ZF2, ZKSCAN19, ZSCAN51	NT2D1 K562 HELA GM12878 ESC
ZNF318	Unknown	Encode	HRIHFB2436, TZF, ZFP318	K562
ZNF335	C2H2 zinc finger factors	Public	MCPH10, NIF-1, NIF1, NIF2	JURKAT
ZNF384	C2H2 zinc finger factors	Encode	CAGH1, CAGH1A, CIZ, ERDA2, NMP4, NP, TNRC1	K562 HEPG2 GM12878
ZNF584	C2H2 zinc finger factors	Encode	-	K562
ZNF589	C2H2 zinc finger factors	Encode	SZF1	K562
ZNF592	C2H2 zinc finger factors	Encode	CAMOS, SCAR5	MCF7
ZNF639	C2H2 zinc finger factors	Encode	ANC-2H01, ANC_2H01, ZASC1	K562
ZNF644	C2H2 zinc finger factors	Public + Encode	BM-005, MYP21, NatF, ZEP-2	K562 HEK293T
ZNF740	C2H2 zinc finger factors	Encode	Zfp740	K562
ZNF750	Unknown	Public	ZFP750	KERATINOCYTE
ZNF766	C2H2 zinc finger factors	Encode	-	K562
ZNF83	C2H2 zinc finger factors	Encode	HPF1, ZNF816B	K562
ZNF92	C2H2 zinc finger factors	Public	HEL-203, HPF12, HTF12, TF12	RETINAL
ZZZ3	Unknown	Encode	ATAC1	HELA GM12878

ReMap 2018 v1.2

ReMap 2018 ^v1.2